PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26472-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 274aa    MW: 29817.8 Da    PI: 4.8716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26472-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-0939652047
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47
                      + +W+tIa ++  gRt++++k++w+++
  TRIUR3_26472-P1 39 KMQRWATIATHLE-GRTDNEIKNYWNTH 65
                     4558*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-133582IPR009057Homeodomain-like
CDDcd001671.59E-63666No hitNo description
PfamPF002497.3E-73765IPR001005SANT/Myb domain
SuperFamilySSF466893.43E-83874IPR009057Homeodomain-like
PROSITE profilePS500906.3654266IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGVGGSIDGR LRKRFTLVFV CVGLSYTNCS MMTTTEEWKM QRWATIATHL EGRTDNEIKN  60
YWNTHIRKKL MRMGVDPVTH QQLPPDHHLD GTSASLMPEG LLWAAVAASL AGLDTGALRQ  120
AQLLQQLLQS IGSNNDATNL IANLAAANSV LNSSSSVVPS HLLQDQLNML SGANCMQPGY  180
LCNTSNFTGQ DVVQRQLIND MSPGTSSFAA AEPADHLCNT TAAFASHDVA PAVDMLPVQE  240
LAGLMEPMEL QLPNLCSLES DSFWKELLDD GYRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700903e-49AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds.
GenBankAM1569043e-49AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0344843e-49BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds.
GenBankBT0543983e-49BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586913e-49HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.22e-73PREDICTED: transcription factor MYB39
TrEMBLM7ZVB30.0M7ZVB3_TRIUA; Transcription factor MYB39
STRINGMLOC_12474.11e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-18myb domain protein 93